EpiDiP Server
This is the web portal for epigenomic diagnostics within the Dept.
of Neuropathology, Institute for Medical Genetics and Pathology,
University Hospital Basel, Switzerland. EpiDiP stands for Epigenomic
Digital Pathology and deals with the visualization and
cross-comparison of (microarray-based) methylome datasets. From
here, you can launch our web applications. Usage is free of charge
but comes without warranty.
Web Applications
Methylome and CNV viewer
hosted locally (mirror 1, no SSL)
Methylome and CNV viewer hosted on
shinyapps.io (mirror 2, with SSL)
Methylome and CNV viewer, experimental
GPU version, fast computation, updates in less than 1
hour, hosted locally (mirror 1, no SSL)
Current UMAP plot as
coordinates (XLSX download)
IDAT uploader (450K and EPIC v1 only, v2 implementation ongoing; UMAP
methylome plot refreshes approx. every 3 to 4 hours irrespective of
uploads, GPU version in less than 1 hour, but still
experimental.)
Information
EpiDiP User
Manual
Methylation Class Descriptions (Annotation)
Methylomanalyse - Information für Einsender
(in German, includes contact information)
Fortschritt in der molekularen Tumordiagnostik
- Die DNA-Methylomanalyse (SMF review article, in German)
Key to soft tissue tumor reference annoation (from GSE140686): 1ZisC74J7LHouoYND3B8vdAeB8aMbCmiZBawypAyHd-I
last update: 2023-06-13, University Hospital Basel